A platform for research: civil engineering, architecture and urbanism
A platform for research: civil engineering, architecture and urbanism
A Comprehensive Transcriptome Atlas Reveals the Crucial Role of LncRNAs in Maintaining Nodulation Homeostasis in Soybean
https://orcid.org/0009-0000-8905-5304
https://orcid.org/0000-0001-9286-0718
AbstractSymbiotic nitrogen fixation (SNF) provides nitrogen for soybean. A primary challenge in enhancing yield through efficient SNF lies in striking a balance between its high energy consumption and plant growth. However, the systemic transcriptional reprogramming during nodulation remains limited. Here, this work conducts a comprehensive RNA‐seq of the roots, cotyledons and leaves of inoculated‐soybean. This work finds 88,814 mRNAs and 6,156 noncoding RNAs (ncRNAs) across various organs. Notably, this work identifies 6,679 nodulation‐regulated mRNAs (NR‐mRNAs), 1,681 long noncoding RNAs (lncRNAs) (NR‐lncRNAs), and 59 miRNAs (NR‐miRNAs). The majority of these NR‐RNAs are associated with plant‐microbial interaction and exhibit high organ specificity. Roots display the highest abundance of NR‐ncRNAs and the most dynamic crosstalk between NR‐lncRNAs and NR‐miRNAs in a GmNARK‐dependent manner. This indicates that while each tissue responds uniquely, GmNARK serves as a primary regulator of the transcriptional control of nodulated‐plants. Furthermore, this work proves that lnc‐NNR6788 and lnc‐NNR7059 promote nodulation by regulating their target genes. This work also shows that the nodulation‐ and GmNARK‐regulated (NNR) lnc‐NNR4481 negatively regulates nodulation through miR172c within a competing endogenous RNA (ceRNA) network. The spatial organ‐type transcriptomic atlas establishes a benchmark and provides a valuable resource for integrative analyses of the mechanism underlying of nodulation and plant growth balance.
A Comprehensive Transcriptome Atlas Reveals the Crucial Role of LncRNAs in Maintaining Nodulation Homeostasis in Soybean
https://orcid.org/0009-0000-8905-5304
https://orcid.org/0000-0001-9286-0718
AbstractSymbiotic nitrogen fixation (SNF) provides nitrogen for soybean. A primary challenge in enhancing yield through efficient SNF lies in striking a balance between its high energy consumption and plant growth. However, the systemic transcriptional reprogramming during nodulation remains limited. Here, this work conducts a comprehensive RNA‐seq of the roots, cotyledons and leaves of inoculated‐soybean. This work finds 88,814 mRNAs and 6,156 noncoding RNAs (ncRNAs) across various organs. Notably, this work identifies 6,679 nodulation‐regulated mRNAs (NR‐mRNAs), 1,681 long noncoding RNAs (lncRNAs) (NR‐lncRNAs), and 59 miRNAs (NR‐miRNAs). The majority of these NR‐RNAs are associated with plant‐microbial interaction and exhibit high organ specificity. Roots display the highest abundance of NR‐ncRNAs and the most dynamic crosstalk between NR‐lncRNAs and NR‐miRNAs in a GmNARK‐dependent manner. This indicates that while each tissue responds uniquely, GmNARK serves as a primary regulator of the transcriptional control of nodulated‐plants. Furthermore, this work proves that lnc‐NNR6788 and lnc‐NNR7059 promote nodulation by regulating their target genes. This work also shows that the nodulation‐ and GmNARK‐regulated (NNR) lnc‐NNR4481 negatively regulates nodulation through miR172c within a competing endogenous RNA (ceRNA) network. The spatial organ‐type transcriptomic atlas establishes a benchmark and provides a valuable resource for integrative analyses of the mechanism underlying of nodulation and plant growth balance.
A Comprehensive Transcriptome Atlas Reveals the Crucial Role of LncRNAs in Maintaining Nodulation Homeostasis in Soybean
https://orcid.org/0009-0000-8905-5304
https://orcid.org/0000-0001-9286-0718
AbstractSymbiotic nitrogen fixation (SNF) provides nitrogen for soybean. A primary challenge in enhancing yield through efficient SNF lies in striking a balance between its high energy consumption and plant growth. However, the systemic transcriptional reprogramming during nodulation remains limited. Here, this work conducts a comprehensive RNA‐seq of the roots, cotyledons and leaves of inoculated‐soybean. This work finds 88,814 mRNAs and 6,156 noncoding RNAs (ncRNAs) across various organs. Notably, this work identifies 6,679 nodulation‐regulated mRNAs (NR‐mRNAs), 1,681 long noncoding RNAs (lncRNAs) (NR‐lncRNAs), and 59 miRNAs (NR‐miRNAs). The majority of these NR‐RNAs are associated with plant‐microbial interaction and exhibit high organ specificity. Roots display the highest abundance of NR‐ncRNAs and the most dynamic crosstalk between NR‐lncRNAs and NR‐miRNAs in a GmNARK‐dependent manner. This indicates that while each tissue responds uniquely, GmNARK serves as a primary regulator of the transcriptional control of nodulated‐plants. Furthermore, this work proves that lnc‐NNR6788 and lnc‐NNR7059 promote nodulation by regulating their target genes. This work also shows that the nodulation‐ and GmNARK‐regulated (NNR) lnc‐NNR4481 negatively regulates nodulation through miR172c within a competing endogenous RNA (ceRNA) network. The spatial organ‐type transcriptomic atlas establishes a benchmark and provides a valuable resource for integrative analyses of the mechanism underlying of nodulation and plant growth balance.
A Comprehensive Transcriptome Atlas Reveals the Crucial Role of LncRNAs in Maintaining Nodulation Homeostasis in Soybean
Advanced Science
Lin, Yanru (author) / Chen, Chong (author) / Chen, Weizhen (author) / Liu, Hangcheng (author) / Xiao, Renhao (author) / Ji, Hongtao (author) / Li, Xia (author)
Advanced Science ; 12
2025-02-01
Article (Journal)
Electronic Resource
English
Crucial Role of FLVCR1a in the Maintenance of Intestinal Heme Homeostasis
British Library Online Contents | 2015
Maintaining Dry-Pipe Sprinkler Systems It's crucial to property protection
British Library Online Contents | 2005